PartitionHomework

We’ll be doing something a little different for this week’s homework. There will not be a question set to answer for this one. Download the files bears.nex and bears.cytb from here.

In the script we created in class (“partition_data_lab/mcmc_partition_morphology.Rev”), write a script in which:

Morphology is modeled via the Mk model
Molecules are modeled via GTR + G model
Both data sources contribute to the tree
An MCC tree is computed

Save the script on your RStudio. I will retrieve it from your RStudio after class April 5.

Run the script to convergence. When I go to check this, I will be checking:

That the script runs
The mcmc converges
A tree file is there

April Wright

3/30/2022