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SystematicsClass
0.2.0
Reference
Articles
R Reminder
Morphological Homology Assignment
Molecular Homology Assignment
Genome-Scale Homology
PAUP, parsimony, and nucletoide substitution models
Introduction to MCMC using RevBayes
Nucleotide substitution models
Discrete morphology - Models and Tree Inference
Partitioned data analysis
Tripartite Model 2 - Clock Models for Character Data
RevBayes Total Evidence Tree Estimation
Phylogenetic Comparative Methods for Paleobiology
Introduction to Phylogenetic Models of Discrete Biogeography
FinalExam
LikelihoodCalc
Models Homework
MolecularModelsHomework
MorphologyHomework
PartitionHomework
PAUPHomework
FinalExam
April Wright
1/25/2022
index.Rmd
For the final:
Estimate a phylogeny.
Group of your choosing
Data of your choosing (molecular, morphological)
Do a more sophisticated analysis with it
Divergence time estimation
Comparative method
Something else
Points: 100 points
Analysis
5 points: Topic choice
20 points: Scripts: I will try to reproduce
15 points: Data preparation (appropriate formats for the analysis)
10 points: Appropriate notes that allow me to reproduce your work from your scripts/commands
Presentation
10 points: Appropriate background given to understand your question and why it is good
10 points: Method is described accruately and with enough information to understand.
10 points: Results are contextualized so others can understand what they mean both for the analysis and for the group
10 points: Presenter is well-prepared and speaks clearly
10 points: Presenter is a conscientious and kind participant in others’ presentations
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