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SystematicsClass
0.2.0
Reference
Articles
R Reminder
Morphological Homology Assignment
Molecular Homology Assignment
Genome-Scale Homology
PAUP, parsimony, and nucletoide substitution models
Nucleotide substitution models
Nucleotide substitution models
Introduction to MCMC using RevBayes
Discrete morphology - Models and Tree Inference
Partitioned data analysis
Final Project
Tripartite Model 2 - Clock Models for Character Data
RevBayes Total Evidence Tree Estimation
Phylogenetic Comparative Methods for Paleobiology
Introduction to Phylogenetic Models of Discrete Biogeography
FinalExam
LikelihoodCalc
Models Homework
PAUPHomework
FinalExam
April Wright
1/25/2022
index.Rmd
For the final:
Estimate a phylogeny.
Group of your choosing
Data of your choosing (molecular, morphological)
Do a more sophisticated analysis with it
Divergence time estimation
Comparative method
Something else
Points: 100 points
Analysis
5 points: Topic choice
20 points: Scripts: I will try to reproduce
15 points: Data preparation (appropriate formats for the analysis)
10 points: Appropriate notes that allow me to reproduce your work from your scripts/commands
Presentation
10 points: Appropriate background given to understand your question and why it is good
10 points: Method is described accruately and with enough information to understand.
10 points: Results are contextualized so others can understand what they mean both for the analysis and for the group
10 points: Presenter is well-prepared and speaks clearly
10 points: Presenter is a conscientious and kind participant in others’ presentations
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