Generate a list of parsimony trees, based on subsamples from phylogenetic matrix

Generate a list of phylogenetic trees based on subsamples from phylogenetic matrix, as generated from function generate_sets. Return return a vector of plots showing the tree and the specified data.

generate_tree_vec(phy_mat, start, stop, tree)

Arguments

phy_mat	Phylogenetic matrix
start	Which character to begin sampling characters at
stop	Which character to end sampling characters at
tree	Starting tree for parsimony search

Value

Vector

Examples

tr <- generate_tree_vec(bears, 1, 2, tree)
#> Generating tree for charset:12
#> Final p-score 2 after  0 nni operations